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濒危植物闽楠RAV基因家族的鉴定与分析

Genome-wide Identification and Analysis of RAV Gene Family in Phoebe bournei, an Endangered Plant

  • 摘要: 闽楠(Phoebe bournei)作为中国特有珍稀濒危树种,其遗传改良和抗逆机制研究对生态保护与经济利用具有重要意义。本研究基于闽楠全基因组数据,通过生物信息学分析方法系统鉴定并分析了RAV基因家族的理化性质、结构特征、及表达特性等。结果显示,闽楠中存在5个RAV基因家族成员(PbRAV01~PbRAV05),均定位于细胞核,具有亲水性,且分散分布于5条染色体上,表现出结构多样性和组织表达特异性。其富含光响应、干旱响应和激素响应元件,暗示参与逆境调控和激素信号转导。在种内共线性分析中发现PbRAV02PbRAV05存在片段重复事件,种间共线性显示闽楠与水稻的RAV基因亲缘关系更近。系统发育树将基因分为3个亚家族,其中亚家族A的PbRAV03PbRAV04与拟南芥AtRAV03进化关系密切。组织表达分析显示,PbRAV05在根、茎、叶中高表达,PbRAV02在根中优先表达。本研究为闽楠分子育种和抗逆机制解析提供了理论依据,也为木兰类植物系统发育研究提供了新视角。

     

    Abstract: Phoebe bournei, a rare and endangered endemic tree species in China, holds significant importance for ecological protection and economic utilization through genetic improvement and stress resistance mechanism research. Based on the whole-genome data of P. bournei, this study systematically identified and analyzed the physicochemical properties, structural characteristics, and expression profiles of the RAV gene family using bioinformatics approaches. The results showed that five RAV gene family members (PbRAV01PbRAV05) were identified in P. bournei, all localized in the nucleus, hydrophilic, and dispersedly distributed on five chromosomes, exhibiting structural diversity and tissue expression specificity. These genes are enriched in light-responsive, drought-responsive, and hormone-responsive elements, suggesting their involvement in stress regulation and hormone signal transduction. Intraspecific collinearity analysis revealed a segmental duplication event between PbRAV02 and PbRAV05, while interspecific collinearity indicated a closer genetic relationship between P. bournei and rice RAV genes. Phylogenetic tree analysis classified the genes into three subfamilies, among which PbRAV03 and PbRAV04 in Subfamily A were closely evolutionarily related to Arabidopsis AtRAV03. Tissue expression analysis showed that PbRAV05 was highly expressed in roots, stems, and leaves, while PbRAV02 was preferentially expressed in roots. This study provides a theoretical basis for molecular breeding and stress resistance mechanism analysis of P. bournei, and offers new insights into the phylogenetic research of Magnoliids.

     

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